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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5dpvSKEAurora kinase A2.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5dpvSKEAurora kinase A2.7.11.11.000
5dt0SKEAurora kinase A2.7.11.10.578
5dr9SKEAurora kinase A2.7.11.10.521
5dosATPAurora kinase A2.7.11.10.484
4o0wADNAurora kinase A2.7.11.10.474
4jajXU1Aurora kinase A2.7.11.10.458
5dr6SKEAurora kinase A2.7.11.10.455
4jbpYPHAurora kinase A2.7.11.10.449
3amaSKEcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.442
4jboWPHAurora kinase A2.7.11.10.441