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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.626
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.568
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.544
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.543
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.512
4rlh0WEEnoyl-[acyl-carrier-protein] reductase [NADH]/0.495
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.492
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.489
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.484
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.465
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.463
2b36NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.462
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.460
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.458
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.455
2nv6ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.455
4o1mNADEnoyl-acyl carrier reductase/0.452
3dheANDEstradiol 17-beta-dehydrogenase 11.1.1.620.446
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.446
4xiwAZMCarbonic anhydrase, alpha type/0.442
1og5SWFCytochrome P450 2C9/0.441