sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5cb3 | APR | O-acetyl-ADP-ribose deacetylase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 5cb3 | APR | O-acetyl-ADP-ribose deacetylase | / | 1.000 | |
| 2bfq | AR6 | [Protein ADP-ribosylglutamate] hydrolase AF_1521 | 3.2.2 | 0.560 | |
| 2bfr | ADP | [Protein ADP-ribosylglutamate] hydrolase AF_1521 | 3.2.2 | 0.558 | |
| 5cb5 | APR | O-acetyl-ADP-ribose deacetylase | / | 0.552 | |
| 5fsx | ADP | Uncharacterized protein | / | 0.523 | |
| 4b1i | A8P | Poly(ADP-ribose) glycohydrolase | 3.2.1.143 | 0.510 | |
| 4b1h | AR6 | Poly(ADP-ribose) glycohydrolase | 3.2.1.143 | 0.487 | |
| 4b1j | A1R | Poly(ADP-ribose) glycohydrolase | 3.2.1.143 | 0.486 | |
| 4na4 | A1R | Poly(ADP-ribose) glycohydrolase | 3.2.1.143 | 0.482 | |
| 3sii | A1R | Uncharacterized protein | / | 0.476 | |
| 3v2b | AR6 | Poly [ADP-ribose] polymerase 15 | 2.4.2.30 | 0.472 | |
| 1ml6 | GBX | Glutathione S-transferase A2 | 2.5.1.18 | 0.462 | |
| 3sig | AR6 | Uncharacterized protein | / | 0.462 | |
| 3uel | A1R | Poly(ADP-ribose) glycohydrolase | 3.2.1.143 | 0.462 | |
| 3gqo | APR | Non-structural polyprotein | / | 0.458 | |
| 3w8d | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.458 | |
| 3g5s | FAD | Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO | / | 0.452 | |
| 2nq8 | ZID | Enoyl-ACP reductase | / | 0.450 | |
| 4d86 | ADP | Poly [ADP-ribose] polymerase 14 | 2.4.2.30 | 0.449 | |
| 5fsy | AR6 | Uncharacterized protein | / | 0.448 | |
| 2hcd | BIV | Vitamin D3 receptor A | / | 0.444 | |
| 2q2q | NAD | Beta-D-hydroxybutyrate dehydrogenase | / | 0.444 | |
| 3vtd | TKD | Vitamin D3 receptor | / | 0.444 | |
| 1psa | 0ZL | Pepsin A | 3.4.23.1 | 0.443 | |
| 1wp4 | NDP | 3-hydroxyisobutyrate dehydrogenase | / | 0.443 | |
| 4xsv | C5P | Ethanolamine-phosphate cytidylyltransferase | 2.7.7.14 | 0.443 | |
| 1i5r | HYC | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.442 | |
| 1ty8 | ADP | Probable ADP-ribose 1''-phosphate phosphatase YML087W | 3.1.3.84 | 0.441 | |
| 3uzw | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.441 | |
| 3vrw | YS5 | Vitamin D3 receptor | / | 0.441 | |
| 4epl | JAI | Jasmonic acid-amido synthetase JAR1 | 6.3.2 | 0.441 | |
| 1opb | RET | Retinol-binding protein 2 | / | 0.440 | |
| 1qor | NDP | Quinone oxidoreductase 1 | / | 0.440 | |
| 3gwf | FAD | Cyclohexanone monooxygenase | / | 0.440 | |
| 3img | BZ3 | Pantothenate synthetase | 6.3.2.1 | 0.440 | |
| 3vy2 | FMN | FMN-binding protein | / | 0.440 |