Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5c8yACPTubulin tyrosine ligase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5c8yACPTubulin tyrosine ligase/1.000
5ca0ACPTubulin tyrosine ligase/0.533
5cb4ACPTubulin tyrosine ligase/0.528
4zhqACPTubulin tyrosine ligase/0.487
4zolACPTubulin tyrosine ligase/0.449
1fmjRTLRetinol dehydratase/0.447