sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
5a02	NAP	Glucose-fructose oxidoreductase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
5a02	NAP	Glucose-fructose oxidoreductase	/	1.000
5a06	NDP	Glucose-fructose oxidoreductase	/	0.720
5a03	NDP	Glucose-fructose oxidoreductase	/	0.657
5a04	NDP	Glucose-fructose oxidoreductase	/	0.647
5a05	NDP	Glucose-fructose oxidoreductase	/	0.604
1h6b	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.543
1h6c	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.534
1ryd	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.533
1h6a	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.520
1h6d	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.486
1rye	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.479
1evj	NAD	Glucose--fructose oxidoreductase	1.1.99.28	0.470
1zh8	NAP	Uncharacterized protein	/	0.446
1ofg	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.445