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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/1.000
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.488
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.483
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.479
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.470
5koiNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.469
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.468
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.466
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.463
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.457
4o1mNADEnoyl-acyl carrier reductase/0.452