sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4ysw | FAD | Xanthine dehydrogenase/oxidase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4ysw | FAD | Xanthine dehydrogenase/oxidase | / | 1.000 | |
| 1wyg | FAD | Xanthine dehydrogenase/oxidase | / | 0.607 | |
| 1ffu | FAD | Carbon monoxide dehydrogenase medium chain | / | 0.531 | |
| 4zoh | FAD | Putative oxidoreductase FAD-binding subunit | / | 0.517 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.466 | |
| 4h2n | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.462 | |
| 2rh9 | IGP | Tryptophan synthase alpha chain | / | 0.460 | |
| 1kvs | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.454 | |
| 4dpw | AGS | Mevalonate diphosphate decarboxylase | / | 0.454 | |
| 3p7n | FMN | Light-activated DNA-binding protein EL222 | / | 0.453 | |
| 3tqh | NDP | Quinone oxidoreductase | / | 0.452 | |
| 4kzo | NAP | Isocitrate dehydrogenase [NADP] cytoplasmic | 1.1.1.42 | 0.450 | |
| 4wuj | FMN | Glycoside hydrolase family 15, cellulose signaling associated protein envoy | / | 0.450 | |
| 1xel | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.448 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.446 | |
| 3mpi | FAD | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.445 | |
| 3uzp | 0CK | Casein kinase I isoform delta | 2.7.11.1 | 0.445 | |
| 3ada | NAD | Subunit alpha of sarocosine oxidase | / | 0.444 | |
| 1dbv | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.443 | |
| 3alm | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.443 | |
| 4fkj | 11K | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.443 | |
| 3inm | NDP | Isocitrate dehydrogenase [NADP] cytoplasmic | 1.1.1.42 | 0.442 | |
| 1pn3 | TYD | dTDP-epi-vancosaminyltransferase | 2.4.1.311 | 0.441 | |
| 3ics | ADP | Coenzyme A disulfide reductase | / | 0.441 | |
| 3jqp | A2P | Ferredoxin--NADP reductase, apicoplast | / | 0.441 | |
| 3r83 | Z14 | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.441 | |
| 4wq4 | ATP | tRNA N6-adenosine threonylcarbamoyltransferase | / | 0.441 | |
| 1guf | NDP | Enoyl-[acyl-carrier-protein] reductase 1, mitochondrial | 1.3.1.10 | 0.440 | |
| 4ewn | 0VR | Imidazole glycerol phosphate synthase subunit HisF | 4.1.3 | 0.440 | |
| 4ge4 | 0KE | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.440 |