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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yp5NAPNicotinamide-nucleotide adenylyltransferase2.7.7.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4yp5NAPNicotinamide-nucleotide adenylyltransferase2.7.7.11.000
4yp7NAPNicotinamide-nucleotide adenylyltransferase2.7.7.10.633
4q73FADBifunctional protein PutA/0.451
1gzuNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.449
1jtvTESEstradiol 17-beta-dehydrogenase 11.1.1.620.449
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.445
2lfoGCHFatty acid-binding protein, liver/0.444