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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4y6uUPGGlucosyl-3-phosphoglycerate synthase2.4.1.266

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4y6uUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2661.000
4y9xUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.635
4y6nUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.601
3ckqUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.461
3o3pGDDGlycosyl transferase, family 2/0.448