sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4v02 | ATP | Site-determining protein |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4v02 | ATP | Site-determining protein | / | 1.000 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.477 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.457 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.457 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.452 | |
| 4obu | PLP | Pyridoxal-dependent decarboxylase domain protein | / | 0.441 | |
| 5aga | ANP | DNA polymerase theta | / | 0.440 |