2.900 Å
X-ray
2015-01-29
Name: | DNA polymerase theta |
---|---|
ID: | DPOLQ_HUMAN |
AC: | O75417 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 99.999 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
1.036 | 1188.000 |
% Hydrophobic | % Polar |
---|---|
41.48 | 58.52 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 46.59 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
43.7327 | 46.0822 | 42.2556 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N1 | O | LYS- 91 | 3.18 | 160.15 | H-Bond (Ligand Donor) |
O1G | OG1 | THR- 117 | 3.01 | 155.29 | H-Bond (Protein Donor) |
O1G | N | SER- 118 | 3.3 | 156.73 | H-Bond (Protein Donor) |
O1B | N | SER- 118 | 3.4 | 126.91 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 121 | 3.31 | 145.85 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 121 | 3.29 | 146.19 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 121 | 3.31 | 0 | Ionic (Protein Cationic) |
O1B | NZ | LYS- 121 | 3.29 | 0 | Ionic (Protein Cationic) |
O2B | OG1 | THR- 122 | 3.09 | 156.33 | H-Bond (Protein Donor) |
O2B | N | THR- 122 | 3.14 | 135.37 | H-Bond (Protein Donor) |
C1' | CB | LYS- 484 | 4.43 | 0 | Hydrophobic |