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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4udrFAD5-(hydroxymethyl)furfural oxidase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4udrFAD5-(hydroxymethyl)furfural oxidase/1.000
4udqFAD5-(hydroxymethyl)furfural oxidase/0.705
5hsaFASAlcohol oxidase 11.1.3.130.513
4qi4FADCellobiose dehydrogenase/0.499
4qi5FADCellobiose dehydrogenase/0.486
4mihFADPyranose 2-oxidase1.1.3.100.484
4qi7FADCellobiose dehydrogenase/0.480
1cboFADCholesterol oxidase1.1.3.60.472
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.471
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.470
1n4uFAECholesterol oxidase1.1.3.60.467
3coxFADCholesterol oxidase1.1.3.60.467
1cc2FADCholesterol oxidase1.1.3.60.466
1mxtFAECholesterol oxidase1.1.3.60.462
4u2lSFDCholesterol oxidase1.1.3.60.462
1galFADGlucose oxidase1.1.3.40.459
3cnjFADCholesterol oxidase1.1.3.60.459
4yntFDAGlucose oxidase, putative/0.459
3bg7FADPyranose 2-oxidase/0.458
4rekFADCholesterol oxidase1.1.3.60.456
1b8sFADCholesterol oxidase1.1.3.60.454
3gyiFADCholesterol oxidase1.1.3.60.452
3gyjFADCholesterol oxidase1.1.3.60.452
4u2sFDACholesterol oxidase1.1.3.60.451
3q9tFAYUncharacterized protein/0.447
4xwrFADCholesterol oxidase1.1.3.60.447
3k4nFADPyranose 2-oxidase/0.445
4xxgFADCholesterol oxidase1.1.3.60.444
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441