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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4udqFAD5-(hydroxymethyl)furfural oxidase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4udqFAD5-(hydroxymethyl)furfural oxidase/1.000
4udrFAD5-(hydroxymethyl)furfural oxidase/0.723
4qi7FADCellobiose dehydrogenase/0.514
5hsaFASAlcohol oxidase 11.1.3.130.514
4qi4FADCellobiose dehydrogenase/0.510
4u2lSFDCholesterol oxidase1.1.3.60.502
3coxFADCholesterol oxidase1.1.3.60.498
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.490
1mxtFAECholesterol oxidase1.1.3.60.489
1n4uFAECholesterol oxidase1.1.3.60.489
4qi5FADCellobiose dehydrogenase/0.486
4z26FADPutative GMC-type oxidoreductase R13510.482
3gyjFADCholesterol oxidase1.1.3.60.481
3cnjFADCholesterol oxidase1.1.3.60.474
1b4vFADCholesterol oxidase1.1.3.60.473
1cboFADCholesterol oxidase1.1.3.60.473
1ijhFADCholesterol oxidase1.1.3.60.472
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.471
3gyiFADCholesterol oxidase1.1.3.60.470
4u2sFDACholesterol oxidase1.1.3.60.470
4xwrFADCholesterol oxidase1.1.3.60.470
4rekFADCholesterol oxidase1.1.3.60.469
4xxgFADCholesterol oxidase1.1.3.60.469
1b8sFADCholesterol oxidase1.1.3.60.467
4yntFDAGlucose oxidase, putative/0.464
1cc2FADCholesterol oxidase1.1.3.60.463
1galFADGlucose oxidase1.1.3.40.461
1n4vFADCholesterol oxidase1.1.3.60.459
3bg7FADPyranose 2-oxidase/0.450
3q9tFAYUncharacterized protein/0.448
2rgoFADAlpha-Glycerophosphate Oxidase/0.447
4mihFADPyranose 2-oxidase1.1.3.100.446
3k4nFADPyranose 2-oxidase/0.443
3vqrFADPutative oxidoreductase/0.440