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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4tv9GTPTubulin alpha-1B chain

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4tv9GTPTubulin alpha-1B chain/1.000
4tuyGTPTubulin alpha-1B chain/0.750
5la6GTPTubulin alpha-1B chain/0.746
4wbnGTPTubulin alpha-1B chain/0.729
4o4iGTPTubulin alpha-1B chain/0.719
4ihjGTPTubulin alpha-1B chain/0.709
4zolGTPTubulin alpha-1B chain/0.627
4iijGTPTubulin alpha-1B chain/0.622
5jqgGTPTubulin alpha-1B chain/0.610
4o4lGTPTubulin alpha-1B chain/0.603
3ryhGTPTubulin alpha chain/0.522
4ffbGTPTubulin alpha-1 chain/0.477