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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rtpSAMDNA adenine methylase2.1.1.72

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4rtpSAMDNA adenine methylase2.1.1.721.000
4rtnSAHDNA adenine methylase2.1.1.720.713
4rtmSAMDNA adenine methylase2.1.1.720.613
4rtrSAMDNA adenine methylase2.1.1.720.607
4golSA8DNA adenine methylase2.1.1.720.594
2oreSAHDNA adenine methylase2.1.1.720.593
4gbeSAHDNA adenine methylase2.1.1.720.583
4rtjSFGDNA adenine methylase2.1.1.720.581
4rtkSAHDNA adenine methylase2.1.1.720.569
2g1pSAHDNA adenine methylase2.1.1.720.546
4rtlSFGDNA adenine methylase2.1.1.720.531
4rtqSAHDNA adenine methylase2.1.1.720.531
4rtoSFGDNA adenine methylase2.1.1.720.523
2dpmSAMModification methylase DpnIIA2.1.1.720.493
4rtsSAMDNA adenine methylase2.1.1.720.475
1booSAHModification methylase PvuII2.1.1.1130.469
1nw5SAMModification methylase RsrI2.1.1.720.456
4h0nSAHDnmt2/0.446
3ldfSAHUncharacterized protein/0.442
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
3pt9SAHDNA (cytosine-5)-methyltransferase 12.1.1.370.440
4onjSFGDNA methyltransferase/0.440