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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qbhAP5Adenylate kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4qbhAP5Adenylate kinase/1.000
4qbiAP5Adenylate kinase/0.614
3dkvAP5Adenylate kinase/0.573
3hpqAP5Adenylate kinase/0.537
4jl6ADPAdenylate kinase/0.533
4jl5ADPAdenylate kinase/0.531
2oo7AP5Adenylate kinase/0.530
1p3jAP5Adenylate kinase/0.528
1akeAP5Adenylate kinase/0.523
4nu0AP5Adenylate kinase/0.496
1ankANPAdenylate kinase/0.489
2eckADPAdenylate kinase/0.481
4x8oAP5Adenylate kinase/0.476
4jkyADPAdenylate kinase/0.466
2cbsR13Cellular retinoic acid-binding protein 2/0.465
4x8lAP5Adenylate kinase/0.456