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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4oa5SAHO-methyltransferase family protein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4oa5SAHO-methyltransferase family protein/1.000
1susSAHCaffeoyl-CoA O-methyltransferase2.1.1.1040.521
2hnkSAHSAM-dependent O-methyltransferase/0.514
3cbgSAHO-methyltransferase/0.495
3vid4TTVascular endothelial growth factor receptor 22.7.10.10.486
3a7dFBNCatechol O-methyltransferase2.1.1.60.485
3duwSAHO-methyltransferase, putative/0.482
3tr6SAHO-methyltransferase/0.478
2zvjKOMCatechol O-methyltransferase2.1.1.60.474
3c3ySAHO-methyltransferase/0.469
1l3iSAHProbable cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating)/0.467
3ssmSAHMycinamicin VI 2''-O-methyltransferase/0.466
4u7tSAHDNA (cytosine-5)-methyltransferase 3A2.1.1.370.464
3lgaSAHtRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltransferase TrmI2.1.1.2190.463
4h0nSAHDnmt2/0.463
5fhqDNCCatechol O-methyltransferase2.1.1.60.463
3grySAMProbable ribosomal RNA small subunit methyltransferase A/0.462
4qppSAHProtein arginine N-methyltransferase 6/0.462
4ymgSAMPutative SAM-dependent O-methyltranferase/0.459
1jr4CL4Catechol O-methyltransferase2.1.1.60.458
3ssoSAHMycinamicin VI 2''-O-methyltransferase/0.456
4c04SFGProtein arginine N-methyltransferase 6/0.455
3egvSAHRibosomal protein L11 methyltransferase2.1.10.443