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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mk728OGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4mk728OGenome polyprotein2.7.7.481.000
4mk928RGenome polyprotein2.7.7.480.578
3h59H59Genome polyprotein2.7.7.480.537
3tyvHI3Genome polyprotein2.7.7.480.522
3u4r08FGenome polyprotein2.7.7.480.511
3d5m4MSGenome polyprotein2.7.7.480.508
3g86T18Genome polyprotein2.7.7.480.498
3uph0C1Genome polyprotein2.7.7.480.493
3u4o08EGenome polyprotein2.7.7.480.491
3gnvXNZGenome polyprotein2.7.7.480.489
3h2lYAKGenome polyprotein2.7.7.480.480
3d28B34Genome polyprotein2.7.7.480.477
3csoXNIGenome polyprotein2.7.7.480.475
3ska053Genome polyprotein2.7.7.480.467
2gc8885Polyprotein/0.466
2giqNN2Genome polyprotein2.7.7.480.457
3igvB80Genome polyprotein2.7.7.480.452
4eaw0NQGenome polyprotein2.7.7.480.452
4mkb28VGenome polyprotein2.7.7.480.446
2yoj8Y6Genome polyprotein2.7.7.480.440