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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m5pFMNNADPH dehydrogenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4m5pFMNNADPH dehydrogenase/1.000
3tjlFMNNADPH dehydrogenase/0.627
4df2FMNNADPH dehydrogenase/0.593
4qaiFMNNADPH dehydrogenase/0.559
1icqFMN12-oxophytodienoate reductase 11.3.1.420.536
1icpFMN12-oxophytodienoate reductase 11.3.1.420.529
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.525
1h50FMNPentaerythritol tetranitrate reductase/0.522
1icsFMN12-oxophytodienoate reductase 11.3.1.420.513
2abbFMNPentaerythritol tetranitrate reductase/0.505
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.505
1bwlFMNNADPH dehydrogenase 11.6.99.10.501
3f03FMNPentaerythritol tetranitrate reductase/0.497
1vyrFMNPentaerythritol tetranitrate reductase/0.491
4jicFMNGTN Reductase/0.491
4tmcFMNOld yellow enzyme/0.486
1bwkFMNNADPH dehydrogenase 11.6.99.10.485
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.485
1oycFMNNADPH dehydrogenase 11.6.99.10.484
4tmbFMNOld yellow enzyme/0.484
1h63FMNPentaerythritol tetranitrate reductase/0.482
3p62FMNPentaerythritol tetranitrate reductase/0.480
3p74FMNPentaerythritol tetranitrate reductase/0.475
3p82FMNPentaerythritol tetranitrate reductase/0.475
3p67FMNPentaerythritol tetranitrate reductase/0.470
4awtFMNNADH:flavin oxidoreductase Sye1/0.469
4rnxFMNNADPH dehydrogenase 11.6.99.10.466
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.465
3p84FMNPentaerythritol tetranitrate reductase/0.461
3p8jFMNPentaerythritol tetranitrate reductase/0.460
2gouFMNNADH:flavin oxidoreductase Sye1/0.459
4h6kFMNNADPH dehydrogenase 11.6.99.10.457
1h51FMNPentaerythritol tetranitrate reductase/0.450
4rnuFMNNADPH dehydrogenase 11.6.99.10.450
4e2bFMNDehydrogenase/0.448
3atzFMNProstaglandin F2a synthase/0.442
3l5lFMNXenobiotic reductase/0.442
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.440