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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lva20MNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4lva20MNicotinamide phosphoribosyltransferase2.4.2.121.000
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.641
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.603
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.589
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.583
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.583
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.571
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.566
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.564
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.557
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.551
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.540
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.510
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.487
2gvgNMNNicotinamide phosphoribosyltransferase2.4.2.120.461
2g96NMNNicotinamide phosphoribosyltransferase2.4.2.120.445