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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.121.000
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.688
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.647
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.625
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.621
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.591
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.590
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.580
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.567
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.562
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.558
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.540
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.538
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.502
2gvgNMNNicotinamide phosphoribosyltransferase2.4.2.120.454
2g96NMNNicotinamide phosphoribosyltransferase2.4.2.120.441