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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k5sPM0Oxygenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4k5sPM0Oxygenase/1.000
4a6nFADTetX family tetracycline inactivation enzyme/0.463
3kb1ADPIron-sulfur cluster carrier protein/0.455
3m1vCOMMethyl-coenzyme M reductase I subunit alpha2.8.4.10.446
3m1vCOMMethyl-coenzyme M reductase I subunit beta2.8.4.10.446
3t4eNADQuinate/shikimate dehydrogenase/0.445
5a0yCOMMethyl-coenzyme M reductase I subunit alpha2.8.4.10.443
5a0yCOMMethyl-coenzyme M reductase I subunit beta2.8.4.10.443