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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jxzATPGlutamine--tRNA ligase6.1.1.18

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4jxzATPGlutamine--tRNA ligase6.1.1.181.000
4jxxATPGlutamine--tRNA ligase6.1.1.180.640
4jyzATPGlutamine--tRNA ligase6.1.1.180.625
1qruATPGlutamine--tRNA ligase6.1.1.180.620
1gtrATPGlutamine--tRNA ligase6.1.1.180.614
2re8GSUGlutamine--tRNA ligase6.1.1.180.603
2rd2QSIGlutamine--tRNA ligase6.1.1.180.602
1qrtATPGlutamine--tRNA ligase6.1.1.180.598
1qrsATPGlutamine--tRNA ligase6.1.1.180.590
1euyQSIGlutamine--tRNA ligase6.1.1.180.583
1qtqQSIGlutamine--tRNA ligase6.1.1.180.581