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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jtw1NUGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4jtw1NUGenome polyprotein2.7.7.481.000
4ju11NZGenome polyprotein2.7.7.480.629
4ju21O0Genome polyprotein2.7.7.480.626
4jvq1MLGenome polyprotein2.7.7.480.589
4jty1NVGenome polyprotein2.7.7.480.553
1nhv154Genome polyprotein2.7.7.480.520
2o5dVR1Genome polyprotein2.7.7.480.519
3cj3SX4Genome polyprotein2.7.7.480.512
2girNN3Genome polyprotein2.7.7.480.501
2d3uCCTPolyprotein/0.484
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.457
5dozNDPJamJ/0.456
2q4bNAPUncharacterized protein At5g02240/0.449
2vqdAP2Biotin carboxylase6.3.4.140.449
3t1tGDPProbable gliding protein mglA/0.448
3vweCOAAlpha-tubulin N-acetyltransferase 1/0.448
1fvpFMANon-fluorescent flavoprotein/0.445
1x2hLPALipoate-protein ligase A6.3.1.200.445
5bsrCOA4-coumarate--CoA ligase 26.2.1.120.443
3lfbZ87Mitogen-activated protein kinase 14/0.442
4an2EUIDual specificity mitogen-activated protein kinase kinase 12.7.12.20.442
1szgFNSCytochrome b2, mitochondrial1.1.2.30.441
3megT27Gag-Pol polyprotein2.7.7.490.440
4l8u9AZSerum albumin/0.440