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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.121.000
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.733
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.658
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.643
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.591
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.574
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.556
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.553
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.547
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.539
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.520
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.519
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.514
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.514
2gvgNMNNicotinamide phosphoribosyltransferase2.4.2.120.448