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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jalSAHtRNA (cytidine(34)-2'-O)-methyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4jalSAHtRNA (cytidine(34)-2'-O)-methyltransferase/1.000
4kgnSAHtRNA (cytidine(34)-2'-O)-methyltransferase/0.466
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.444
1kvrNADUDP-glucose 4-epimerase5.1.3.20.442
1nahNADUDP-glucose 4-epimerase5.1.3.20.440