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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4id5T27Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4id5T27Gag-Pol polyprotein2.7.7.491.000
4i2pG73Gag-Pol polyprotein2.7.7.490.768
4g1qT27Gag-Pol polyprotein2.7.7.490.742
2zd1T27Gag-Pol polyprotein2.7.7.490.741
4ifvT27Gag-Pol polyprotein2.7.7.490.725
3qlhT27Gag-Pol polyprotein2.7.7.490.683
2ze2T27Gag-Pol polyprotein2.7.7.490.557
4ig3T27Gag-Pol polyprotein2.7.7.490.543
1c1bGCAGag-Pol polyprotein2.7.7.490.539
1tl3H20Gag-Pol polyprotein2.7.7.490.533
4i2q1BTGag-Pol polyprotein2.7.7.490.520
4kfbT27Gag-Pol polyprotein2.7.7.490.514
3ffi3OBGag-Pol polyprotein2.7.7.490.510
1tktH12Gag-Pol polyprotein2.7.7.490.503
1rt4UC1Gag-Pol polyprotein2.7.7.490.496
3bgrT27Gag-Pol polyprotein2.7.7.490.496
4rw6494Gag-Pol polyprotein2.7.7.490.494
1tl1H18Gag-Pol polyprotein2.7.7.490.488
2opsHBQGag-Pol polyprotein2.7.7.490.477
3irxUDRGag-Pol polyprotein2.7.7.490.455
1rt7UC4Gag-Pol polyprotein2.7.7.490.454
1tkzH16Gag-Pol polyprotein2.7.7.490.454
1rt2TNKGag-Pol polyprotein2.7.7.490.449
4mfb29TGag-Pol polyprotein2.7.7.490.449
3nbpJGZGag-Pol polyprotein2.7.7.490.447
2hnzPC0Gag-Pol polyprotein2.7.7.490.444