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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hxyNDPPlm1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4hxyNDPPlm1/1.000
4l4xNDPAmphI/0.489
1edoNAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic1.1.1.1000.473
3sx2NADUncharacterized protein/0.473
4kwhNAPReductase homolog/0.471
5jlaNADPutative short-chain dehydrogenase/reductase/0.470
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.469
3dheANDEstradiol 17-beta-dehydrogenase 11.1.1.620.464
2o23NAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.462
1x7gNAPPutative ketoacyl reductase1.3.10.460
3nugNADPyridoxal 4-dehydrogenase1.1.1.1070.459
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.457
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.453
4dc0NDPPutative ketoacyl reductase1.3.10.451
4dc1NDPPutative ketoacyl reductase1.3.10.450
1u7tTDT3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.448
1x7hNDPPutative ketoacyl reductase1.3.10.447
2dteNAIGlucose 1-dehydrogenase related protein/0.447
1w4zNAPPutative ketoacyl reductase1.3.10.446
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.442
2gdzNAD15-hydroxyprostaglandin dehydrogenase [NAD(+)]1.1.1.1410.440
3ndrNADPyridoxal 4-dehydrogenase1.1.1.1070.440