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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.35

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.351.000
2p5uNADUDP-glucose 4-epimerase/0.539
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.500
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.498
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.495
4lk3NADUDP-glucuronic acid decarboxylase 14.1.1.350.481
4yagNAIC alpha-dehydrogenase/0.478
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.477
4egbNADdTDP-glucose 4,6-dehydratase/0.476
1g1aNADdTDP-glucose 4,6-dehydratase/0.471
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.471
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.467
4yaiNAIC alpha-dehydrogenase/0.466
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.465
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.465
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.464
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.463
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.459
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.454
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.451
1kvrNADUDP-glucose 4-epimerase5.1.3.20.448
2c20NADUDP-glucose 4-epimerase/0.445
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.445
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.444
4fn4NADShort chain dehydrogenase/0.442
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.440
3toxNAPPutative oxidoreductase/0.440
4esoNAPPutative oxidoreductase/0.440