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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eaw0NQGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4eaw0NQGenome polyprotein2.7.7.481.000
3h59H59Genome polyprotein2.7.7.480.605
3d5m4MSGenome polyprotein2.7.7.480.603
4mk728OGenome polyprotein2.7.7.480.583
4mk928RGenome polyprotein2.7.7.480.576
3ska053Genome polyprotein2.7.7.480.551
3gnvXNZGenome polyprotein2.7.7.480.550
3h2lYAKGenome polyprotein2.7.7.480.546
3d28B34Genome polyprotein2.7.7.480.532
3igvB80Genome polyprotein2.7.7.480.516
3hkyIX6Genome polyprotein2.7.7.480.504
3g86T18Genome polyprotein2.7.7.480.502
3upi0C2Genome polyprotein2.7.7.480.498
3bsa1PDGenome polyprotein2.7.7.480.494
3uph0C1Genome polyprotein2.7.7.480.487
3csoXNIGenome polyprotein2.7.7.480.486
3gnwXNCGenome polyprotein2.7.7.480.481
2yoj8Y6Genome polyprotein2.7.7.480.470
3u4o08EGenome polyprotein2.7.7.480.468
2giqNN2Genome polyprotein2.7.7.480.466
4mk828QGenome polyprotein2.7.7.480.458
3ske054Genome polyprotein2.7.7.480.448