sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4e5m | NAP | Phosphonate dehydrogenase | 1.20.1.1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4e5m | NAP | Phosphonate dehydrogenase | 1.20.1.1 | 1.000 | |
| 4nu5 | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.623 | |
| 4nu6 | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.528 | |
| 4e5n | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.484 | |
| 4e5k | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.476 | |
| 4xcv | NDP | Probable hydroxyacid dehydrogenase protein | / | 0.466 | |
| 2gmh | FAD | Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial | 1.5.5.1 | 0.465 | |
| 5dqr | FAD | 7-hydroxymethyl chlorophyll a reductase, chloroplastic | 1.17.7.2 | 0.455 | |
| 3bhi | NAP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.452 | |
| 2dbq | NAP | Glyoxylate reductase | 1.1.1.26 | 0.445 | |
| 1hku | NAD | C-terminal-binding protein 1 | 1.1.1 | 0.444 | |
| 4weq | NAP | NAD-dependent dehydrogenase | / | 0.443 | |
| 5a3b | APR | SIR2 family protein | / | 0.443 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.442 | |
| 2i3g | NAP | N-acetyl-gamma-glutamyl-phosphate reductase | 1.2.1.38 | 0.441 |