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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.670
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.650
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.633
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.606
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.571
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.557
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.554
2idzZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.536
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.526
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.521
4rlh0WEEnoyl-[acyl-carrier-protein] reductase [NADH]/0.514
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.512
1enzNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.511
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.509
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.502
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.486
2ie0ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.480
2ntvP1HEnoyl-[acyl-carrier-protein] reductase [NADH]/0.476