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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b8zNAPGDP-L-fucose synthase1.1.1.271

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4b8zNAPGDP-L-fucose synthase1.1.1.2711.000
4b8wNAPGDP-L-fucose synthase1.1.1.2710.570
4e5yNDPGDP-L-fucose synthase1.1.1.2710.494
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.470
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.463
4j7xNAPSepiapterin reductase1.1.1.1530.458
4j7uNAPSepiapterin reductase1.1.1.1530.453
3a4vNADNDP-sugar epimerase/0.446