sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3vpb	ADP	Glutamate--LysW ligase ArgX	6.3.2

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3vpb	ADP	Glutamate--LysW ligase ArgX	6.3.2	1.000
3sfe	FAD	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	/	0.478
4hwk	NAP	Sepiapterin reductase	1.1.1.153	0.468
4ftt	6HK	Serine/threonine-protein kinase Chk1	2.7.11.1	0.460
4c7k	NAP	Corticosteroid 11-beta-dehydrogenase isozyme 1	1.1.1.146	0.459
4ftr	5HK	Serine/threonine-protein kinase Chk1	2.7.11.1	0.459
3wo0	ADP	Alanine--anticapsin ligase	/	0.454
2nnl	NAP	Dihydroflavonol 4-reductase	1.1.1.219	0.452
4ytn	FAD	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	/	0.452
5c2t	FAD	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	/	0.452
3qc9	ADP	Rhodopsin kinase	/	0.449
4fsw	HK6	Serine/threonine-protein kinase Chk1	2.7.11.1	0.449
4ku5	DCC	3-oxoacyl-[ACP] synthase III	/	0.447
3up4	FAD	2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase	1.14.13.160	0.446
4j7x	NAP	Sepiapterin reductase	1.1.1.153	0.443
3drc	MTX	Dihydrofolate reductase	1.5.1.3	0.440