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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3upi0C2Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3upi0C2Genome polyprotein2.7.7.481.000
3ska053Genome polyprotein2.7.7.480.743
3d5m4MSGenome polyprotein2.7.7.480.598
3gnvXNZGenome polyprotein2.7.7.480.593
3h59H59Genome polyprotein2.7.7.480.568
3bsa1PDGenome polyprotein2.7.7.480.565
4eaw0NQGenome polyprotein2.7.7.480.553
3gnwXNCGenome polyprotein2.7.7.480.546
3d28B34Genome polyprotein2.7.7.480.537
3h2lYAKGenome polyprotein2.7.7.480.536
1z4uPH9Polyprotein/0.524
1yvfPH7Polyprotein/0.507
4mk828QGenome polyprotein2.7.7.480.498
4iz02BIGenome polyprotein2.7.7.480.489
4mk728OGenome polyprotein2.7.7.480.467
4ih71ERGenome polyprotein2.7.7.480.456
2fvc888Polyprotein/0.451