Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u5sFADFAD-linked sulfhydryl oxidase ALR1.8.3.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3u5sFADFAD-linked sulfhydryl oxidase ALR1.8.3.21.000
3r7cFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.609
3tk0FADFAD-linked sulfhydryl oxidase ALR1.8.3.20.599
3mbgFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.550
4e0iFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.546
2hj3FADFAD-linked sulfhydryl oxidase ERV1/0.524
3w4yFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.523
1jraFADFAD-linked sulfhydryl oxidase ERV21.8.3.20.513
4e0hFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.510
3t59FADSulfhydryl oxidase 11.8.3.20.504
1jr8FADFAD-linked sulfhydryl oxidase ERV21.8.3.20.477
4p2lFADSulfhydryl oxidase 11.8.3.20.476
3lliFADSulfhydryl oxidase 11.8.3.20.458
3t58FADSulfhydryl oxidase 11.8.3.20.456
3llkFADSulfhydryl oxidase 11.8.3.20.455
1oqcFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.443