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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u2mFADFAD-linked sulfhydryl oxidase ALR1.8.3.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3u2mFADFAD-linked sulfhydryl oxidase ALR1.8.3.21.000
3tk0FADFAD-linked sulfhydryl oxidase ALR1.8.3.20.625
3u2lFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.594
1oqcFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.579
3mbgFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.535
4ldkFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.534
4e0iFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.514
4e0hFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.482
2hj3FADFAD-linked sulfhydryl oxidase ERV1/0.467
2e0nSAHPrecorrin-2 C20-methyltransferase/0.463
4relKMPGlycosyltransferase/0.461
4o701QKBromodomain-containing protein 4/0.460
1obnASVIsopenicillin N synthase1.21.3.10.452
2gjlFMNNitronate monooxygenase1.13.12.160.448
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.448
3owaFADAcyl-CoA dehydrogenase/0.448
4b4w9L9Bifunctional protein FolD/0.448
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
2jl1NAPTriphenylmethane reductase/0.445
2ydxSTLMethionine adenosyltransferase 2 subunit beta/0.445
3m1vCOMMethyl-coenzyme M reductase I subunit alpha2.8.4.10.445
3m1vCOMMethyl-coenzyme M reductase I subunit beta2.8.4.10.445
1jr8FADFAD-linked sulfhydryl oxidase ERV21.8.3.20.444
5dhgDGVNociceptin receptor/0.443
2a94AP0L-lactate dehydrogenase1.1.1.270.442
3gwlFADFAD-linked sulfhydryl oxidase1.8.3.20.442
4pu2PLUAminopeptidase N/0.442
5dldUD1UDP-N-Acetylglucosamine 2-epimerase/0.442
1t4cCOAFormyl-CoA:oxalate CoA-transferase/0.441
3b9lAZZSerum albumin/0.440
3q43D66M1 family aminopeptidase3.4.110.440