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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tk0FADFAD-linked sulfhydryl oxidase ALR1.8.3.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3tk0FADFAD-linked sulfhydryl oxidase ALR1.8.3.21.000
3u5sFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.755
3u2lFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.634
3u2mFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.633
1oqcFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.606
3r7cFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.584
4ldkFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.574
3mbgFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.533
2hj3FADFAD-linked sulfhydryl oxidase ERV1/0.508
4e0hFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.493
3gwlFADFAD-linked sulfhydryl oxidase1.8.3.20.473
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
2e0nSAHPrecorrin-2 C20-methyltransferase/0.443