Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sptUD1Bifunctional protein GlmU

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3sptUD1Bifunctional protein GlmU/1.000
3dj4UD1Bifunctional protein GlmU/0.567
4g3qUD1Bifunctional protein GlmU/0.557
4g3sUD1Bifunctional protein GlmU/0.557
3d8vUD1Bifunctional protein GlmU/0.522
4g3pUD1Bifunctional protein GlmU/0.500
4k6rATPBifunctional protein GlmU/0.466