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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rmeRMEAcidic mammalian chitinase3.2.1.14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3rmeRMEAcidic mammalian chitinase3.2.1.141.000
3rm8RM8Acidic mammalian chitinase3.2.1.140.554
3wd4A1LChitinase B3.2.1.140.483
3wd3A1LChitinase B3.2.1.140.471
1o6i0HZChitinase B3.2.1.140.463
3arwCTIChitinase A/0.449
3wd2A1LChitinase B3.2.1.140.445