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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rhaFDAPutrescine oxidase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3rhaFDAPutrescine oxidase/1.000
2yg7FADPutrescine oxidase/0.577
4i58FADCyclohexylamine Oxidase/0.519
3cn8FADPolyamine oxidase FMS1/0.512
4fwjFADLysine-specific histone demethylase 1B10.505
3cntFADPolyamine oxidase FMS1/0.495
1xpqFADPolyamine oxidase FMS1/0.490
4echFADPolyamine oxidase FMS1/0.489
3zdnFADMonoamine oxidase N1.4.3.40.482
3cndFADPolyamine oxidase FMS1/0.480
2yg4FADPutrescine oxidase/0.478
5l3dFADLysine-specific histone demethylase 1A10.475
2babFADPutative aminooxidase/0.474
3k7tFAD6-hydroxy-L-nicotine oxidase/0.468
2jb1FADL-amino acid oxidase/0.465
3kpfFADPolyamine oxidase1.5.3.140.463
2uxxFAJLysine-specific histone demethylase 1A10.460
3kveFADL-amino-acid oxidase/0.458
1h81FADPolyamine oxidase1.5.3.140.455
2jb2FADL-amino acid oxidase/0.453
4guuFA9Lysine-specific histone demethylase 1B10.451
1e1lFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.447
1f3pFADFerredoxin reductase/0.447
4udrFAD5-(hydroxymethyl)furfural oxidase/0.447
2b9yFADPutative aminooxidase/0.443
1tdoFADL-amino-acid oxidase1.4.3.20.442
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.442
2ba9FADPutative aminooxidase/0.440