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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rabGNPRas-related protein Rab-3A

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3rabGNPRas-related protein Rab-3A/1.000
4lhwGNPRas-related protein Rab-8A/0.562
2zetGTPRas-related protein Rab-27B/0.561
1xtsGTPGTP-binding protein Rheb/0.544
3bc1GNPRas-related protein Rab-27A/0.541
3lbnGNPGTPase HRas/0.537
1g17GNPRas-related protein SEC4/0.534
3e5hGNPRas-related protein Rab-28/0.533
3tsoGNPRas-related protein Rab-25/0.530
5dhaGNPGTP-binding nuclear protein Ran/0.527
1ibrGNPGTP-binding nuclear protein Ran/0.520
3v4fGNPGTPase HRas/0.520
5b2zGNPGTPase HRas/0.520
1oixGDPRas-related protein Rab-11A/0.519
2gilGTPRas-related protein Rab-6A/0.519
1kmqGNPTransforming protein RhoA/0.512
4cymGCPRas-related protein Rab-32/0.512
3oesGNPGTPase RhebL1/0.510
3nbzGTPGTP-binding nuclear protein Ran/0.509
3qbtGNPRas-related protein Rab-8A/0.508
1zc3GNPRas-related protein Ral-A/0.505
5hpyGDPTransforming protein RhoA/0.504
4qxaGTPRas-related protein Rab-9A/0.501
1yzqGNPRas-related protein Rab-6A/0.499
4o25GTPGTP-binding protein Rheb/0.499
3i3sGNPGTPase HRas/0.498
1ow3GDPTransforming protein RhoA/0.495
1xtrGNPGTP-binding protein Rheb/0.494
4nyiGNPGTPase HRas/0.490
5jljGNPGTP-binding nuclear protein Ran/0.490
2clsGTPRho-related GTP-binding protein Rho6/0.486
4rkfGNPRas-related protein Rab-3/0.486
1cxzGSPTransforming protein RhoA/0.482
1zc4GNPRas-related protein Ral-A/0.481
4uj3GNPRas-related protein Rab-11A/0.479
4mitGTPRho-related protein racC/0.478
3oivGNPGTPase HRas/0.477
1s1cGNPTransforming protein RhoA/0.476
4xoiGTPTransforming protein RhoA/0.476
1m7bGTPRho-related GTP-binding protein RhoE/0.474
1zbdGTPRas-related protein Rab-3A/0.472
3rs5GNPGTPase HRas/0.470
2ffqGSPRas-related protein Rab-6B/0.468
4uj5GNPRas-related protein Rab-11A/0.468
2gvdGSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short/0.467
3kz1GSPTransforming protein RhoA/0.466
3oiuGNPGTPase HRas/0.466
3w3zGTPGTP-binding nuclear protein Ran/0.466
3tklGTPRas-related protein Rab-1A/0.465
3tnfGNPRas-related protein Rab-8A/0.465
4dltGNPGTPase HRas/0.465
3bbpGTPRas-related protein Rab-6A/0.464
3kucGDPRas-related protein Rap-1A/0.463
1cs4GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short/0.462
1t91GTPRas-related protein Rab-7a/0.462
1zd9GDPADP-ribosylation factor-like protein 8A/0.460
4dlwGNPGTPase HRas/0.460
3sbeGNPRas-related C3 botulinum toxin substrate 1/0.459
3ea5GDPGTP-binding nuclear protein Ran/0.458
2w2xGSPRas-related C3 botulinum toxin substrate 2/0.457
3rs7GNPGTPase HRas/0.457
2gcpGSPRho-related GTP-binding protein RhoC/0.454
4gzmGSPRas-related C3 botulinum toxin substrate 1/0.453
1mh1GNPRas-related C3 botulinum toxin substrate 1/0.448
1u0hGSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short/0.447
4kvgGTPRas-related protein Rap-1A/0.447
1yhnGTPRas-related protein Rab-7a/0.446
3c14GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short/0.446
1z2cGNPRho-related GTP-binding protein RhoC/0.441
3a6pGTPGTP-binding nuclear protein Ran/0.440
5c46GSPRas-related protein Rab-11A/0.440