Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r7wGNPGTP-binding protein GTR2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3r7wGNPGTP-binding protein GTR2/1.000
1snyNAPLD36273p/0.454
4dieC5PCytidylate kinase/0.452
1a9zUPGUDP-glucose 4-epimerase5.1.3.20.446
1giaGSPGuanine nucleotide-binding protein G(i) subunit alpha-1/0.445
4yaiNAIC alpha-dehydrogenase/0.445
2dteNAIGlucose 1-dehydrogenase related protein/0.443
4yagNAIC alpha-dehydrogenase/0.442