sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3q0u | LL3 | HTH-type transcriptional regulator EthR |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3q0u | LL3 | HTH-type transcriptional regulator EthR | / | 1.000 | |
| 3g1m | RF3 | HTH-type transcriptional regulator EthR | / | 0.708 | |
| 3o8g | O8G | HTH-type transcriptional regulator EthR | / | 0.697 | |
| 3g1l | RF2 | HTH-type transcriptional regulator EthR | / | 0.607 | |
| 3sfi | 3SF | HTH-type transcriptional regulator EthR | / | 0.605 | |
| 3o8h | O8H | HTH-type transcriptional regulator EthR | / | 0.595 | |
| 3q0v | LL4 | HTH-type transcriptional regulator EthR | / | 0.584 | |
| 3tp0 | FO5 | HTH-type transcriptional regulator EthR | / | 0.577 | |
| 4dw6 | 0MN | HTH-type transcriptional regulator EthR | / | 0.497 | |
| 4j6c | STR | Cytochrome P450 monooxygenase | / | 0.481 | |
| 3bg7 | FAD | Pyranose 2-oxidase | / | 0.463 | |
| 4j6b | PLO | Cytochrome P450 monooxygenase | / | 0.455 | |
| 4j6d | TES | Cytochrome P450 monooxygenase | / | 0.450 | |
| 4jbt | ASD | Cytochrome P450 monooxygenase | / | 0.446 | |
| 4hai | I23 | Bifunctional epoxide hydrolase 2 | 3.1.3.76 | 0.441 | |
| 3t59 | FAD | Sulfhydryl oxidase 1 | 1.8.3.2 | 0.440 |