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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nd6ATPPhosphopantetheine adenylyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3nd6ATPPhosphopantetheine adenylyltransferase/1.000
2zsaADPPantothenate kinase2.7.1.330.477
1icsFMN12-oxophytodienoate reductase 11.3.1.420.461
2hfuMEVMevalonate kinase/0.458
4q71FADBifunctional protein PutA/0.452
3qwbNDPProbable quinone oxidoreductase1.6.5.50.451
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.451
3aezGDPPantothenate kinase2.7.1.330.450
3rbaCODPhosphopantetheine adenylyltransferase/0.449
1j49NADD-lactate dehydrogenase1.1.1.280.446
2zjmF1MBeta-secretase 13.4.23.460.446
2ilvC5PAlpha-2,3/2,6-sialyltransferase/sialidase/0.445
2a0yDIHPurine nucleoside phosphorylase2.4.2.10.443
3ziuLSSLeucyl-tRNA synthetase/0.443
2gesCOKPantothenate kinase2.7.1.330.442
2qbuSAHPrecorrin-2 methyltransferase/0.441
4acxS8ZBeta-secretase 13.4.23.460.441
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.441
1nuqNXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.440