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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.21.000
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.622
3vo2FADFerredoxin--NADP reductase/0.571
2b5oFADFerredoxin--NADP reductase1.18.1.20.538
1gawFADFerredoxin/0.513
1gaqFADFerredoxin/0.501
1h42FADFerredoxin--NADP reductase1.18.1.20.493
1w35FADFerredoxin--NADP reductase1.18.1.20.489
3w5uFADFerredoxin/0.486
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.482
1sm4FADFerredoxin--NADP reductase/0.472
1bjkFADFerredoxin--NADP reductase1.18.1.20.471
1ja1FADNADPH--cytochrome P450 reductase/0.469
2rc5FADFerredoxin--NADP reductase/0.467
3zc3FADFerredoxin--NADP reductase1.18.1.20.461
1amoFADNADPH--cytochrome P450 reductase/0.459
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.456
4c43FADFerredoxin--NADP reductase1.18.1.20.454
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.452
1j9zFADNADPH--cytochrome P450 reductase/0.451
3fpkFADFerredoxin-NADP reductase/0.451
1gjrFADFerredoxin--NADP reductase1.18.1.20.449
1ogiFADFerredoxin--NADP reductase1.18.1.20.448
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.448
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.447
3ojxFADNADPH--cytochrome P450 reductase/0.445
1queFADFerredoxin--NADP reductase1.18.1.20.441
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.440