sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3mdv | CL6 | Cholesterol 24-hydroxylase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3mdv | CL6 | Cholesterol 24-hydroxylase | / | 1.000 | |
| 4enh | FVX | Cholesterol 24-hydroxylase | / | 0.611 | |
| 2q9f | C3S | Cholesterol 24-hydroxylase | / | 0.608 | |
| 3mdm | FJZ | Cholesterol 24-hydroxylase | / | 0.566 | |
| 1eup | ASD | 6-deoxyerythronolide B hydroxylase | / | 0.463 | |
| 1pkf | EPD | Epothilone C/D epoxidase | 1.14 | 0.460 | |
| 3k9v | CPS | 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial | / | 0.460 | |
| 4tuv | CPZ | Cytochrome P450 119 | 1.14 | 0.459 | |
| 3p3z | P3Z | Putative cytochrome P450 | / | 0.458 | |
| 4r20 | AER | Cytochrome P450 family 17 polypeptide 2 | / | 0.456 | |
| 4g7g | VFV | Lanosterol 14-alpha-demethylase | / | 0.455 | |
| 5hs1 | VOR | Lanosterol 14-alpha demethylase | / | 0.452 | |
| 1jio | DEB | 6-deoxyerythronolide B hydroxylase | / | 0.451 | |
| 4ubs | DIF | Pentalenic acid synthase | 1.14.15.11 | 0.448 | |
| 3p99 | LNP | Lanosterol 14-alpha-demethylase | / | 0.447 | |
| 1jip | KTN | 6-deoxyerythronolide B hydroxylase | / | 0.444 | |
| 1q5d | EPB | Epothilone C/D epoxidase | 1.14 | 0.441 | |
| 4r21 | STR | Cytochrome P450 family 17 polypeptide 2 | / | 0.441 | |
| 3gw9 | VNI | Lanosterol 14-alpha-demethylase | / | 0.440 | |
| 4aw3 | MYV | Mycinamicin IV hydroxylase/epoxidase | / | 0.440 |