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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lakKR1Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3lakKR1Gag-Pol polyprotein2.7.7.491.000
3drpR8EGag-Pol polyprotein2.7.7.490.604
3t1a5MAGag-Pol polyprotein2.7.7.490.597
3lalKRVGag-Pol polyprotein2.7.7.490.595
3c6uM22Gag-Pol polyprotein2.7.7.490.583
3dyaPZLGag-Pol polyprotein2.7.7.490.583
3c6tM14Gag-Pol polyprotein2.7.7.490.581
3t195MAGag-Pol polyprotein2.7.7.490.577
3tamM06Gag-Pol polyprotein2.7.7.490.571
4h4m494Gag-Pol polyprotein2.7.7.490.560
2be2R22Gag-Pol polyprotein2.7.7.490.559
3dmjGWEPol protein/0.554
4rw4494Gag-Pol polyprotein2.7.7.490.551
3dokGWJPol protein/0.550
4h4o506Gag-Pol polyprotein2.7.7.490.550
3drrR8EGag-Pol polyprotein2.7.7.490.546
2wonZZEGag-Pol polyprotein2.7.7.490.531
4rw6494Gag-Pol polyprotein2.7.7.490.530
3lamKRPGag-Pol polyprotein2.7.7.490.527
4mfb29TGag-Pol polyprotein2.7.7.490.522
2ynhEURGag-Pol polyprotein2.7.7.490.517
2ynfWHUGag-Pol polyprotein2.7.7.490.515
3lanKBTGag-Pol polyprotein2.7.7.490.506
2b5j3ACGag-Pol polyprotein2.7.7.490.503
3dolGWIPol protein/0.500
3dlgGWEGag-Pol polyprotein2.7.7.490.492
3di6PDZGag-Pol polyprotein2.7.7.490.482
3dleGFAGag-Pol polyprotein2.7.7.490.481
1rt1MKCGag-Pol polyprotein2.7.7.490.479
1jlaTNKGag-Pol polyprotein2.7.7.490.474
1c1c612Gag-Pol polyprotein2.7.7.490.469
3e01PZ2Gag-Pol polyprotein2.7.7.490.468
1ep4S11Gag-Pol polyprotein2.7.7.490.461
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.460
5ai5BSUBifunctional epoxide hydrolase 23.1.3.760.452
3qlhT27Gag-Pol polyprotein2.7.7.490.450
4i2pG73Gag-Pol polyprotein2.7.7.490.449
4id5T27Gag-Pol polyprotein2.7.7.490.446
4wa9AXITyrosine-protein kinase ABL12.7.10.20.444
1s1vTNKGag-Pol polyprotein2.7.7.490.443
3bgrT27Gag-Pol polyprotein2.7.7.490.443
2zd1T27Gag-Pol polyprotein2.7.7.490.442
3nr4PYVAbscisic acid receptor PYL2/0.440