sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3l0l | HC3 | Nuclear receptor ROR-gamma |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3l0l | HC3 | Nuclear receptor ROR-gamma | / | 1.000 | |
| 3kyt | HC2 | Nuclear receptor ROR-gamma | / | 0.615 | |
| 4nie | NBH | Nuclear receptor ROR-gamma | / | 0.581 | |
| 4nb6 | 444 | Nuclear receptor ROR-gamma | / | 0.567 | |
| 1n83 | CLR | Nuclear receptor ROR-alpha | / | 0.528 | |
| 1s0x | C3S | Nuclear receptor ROR-alpha | / | 0.526 | |
| 1nq7 | ARL | Nuclear receptor ROR-beta | / | 0.476 | |
| 4bb6 | HD1 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.472 | |
| 4l9q | 9TP | Serum albumin | / | 0.468 | |
| 2zb4 | 5OP | Prostaglandin reductase 2 | 1.3.1.48 | 0.465 | |
| 3zw9 | NAD | Peroxisomal bifunctional enzyme | 1.1.1.35 | 0.465 | |
| 4jx1 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.465 | |
| 4l4x | NDP | AmphI | / | 0.464 | |
| 1dyj | DDF | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.462 | |
| 4g7g | VFV | Lanosterol 14-alpha-demethylase | / | 0.462 | |
| 4ryv | ZEA | Protein LlR18A | / | 0.462 | |
| 3g70 | A5T | Renin | 3.4.23.15 | 0.459 | |
| 2qbl | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.457 | |
| 3zuy | TCH | Transporter | / | 0.457 | |
| 1n4h | REA | Nuclear receptor ROR-beta | / | 0.456 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.456 | |
| 3tda | PN0 | Cytochrome P450 2D6 | / | 0.454 | |
| 3och | 2MX | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 1zga | HMK | Isoflavone 4'-O-methyltransferase | / | 0.452 | |
| 1dz4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.451 | |
| 2q9f | C3S | Cholesterol 24-hydroxylase | / | 0.451 | |
| 1f17 | NAI | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.450 | |
| 3aty | FMN | Prostaglandin F2a synthase | / | 0.450 | |
| 2z3u | CRR | Cytochrome P450 | / | 0.449 | |
| 3fwj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.449 | |
| 3uov | FAD | 2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase | 1.14.13.160 | 0.448 | |
| 4ia7 | BIV | Vitamin D3 receptor A | / | 0.448 | |
| 1dhj | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 3ssn | MVI | Mycinamicin VI 2''-O-methyltransferase | / | 0.447 | |
| 3tm5 | SFG | Uncharacterized protein | / | 0.447 | |
| 4cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 4ia1 | BIV | Vitamin D3 receptor A | / | 0.447 | |
| 1k6t | XN1 | Gag-Pol polyprotein | 3.4.23.16 | 0.446 | |
| 2bxo | OPB | Serum albumin | / | 0.446 | |
| 3uic | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.446 | |
| 4l8u | 9AZ | Serum albumin | / | 0.446 | |
| 4j6b | PLO | Cytochrome P450 monooxygenase | / | 0.445 | |
| 4jvf | 17X | Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta | / | 0.445 | |
| 4r20 | AER | Cytochrome P450 family 17 polypeptide 2 | / | 0.445 | |
| 1re9 | DSO | Camphor 5-monooxygenase | 1.14.15.1 | 0.444 | |
| 3ict | ADP | Coenzyme A disulfide reductase | / | 0.444 | |
| 1dz6 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.443 | |
| 1k6c | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.443 | |
| 1mr9 | ACO | Streptogramin A acetyltransferase | 2.3.1 | 0.443 | |
| 4geb | 0LD | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.443 | |
| 4ia3 | BIV | Vitamin D3 receptor A | / | 0.443 | |
| 1q20 | PLO | Sulfotransferase family cytosolic 2B member 1 | 2.8.2.2 | 0.442 | |
| 2d29 | FAD | Acyl-CoA dehydrogenase | / | 0.442 | |
| 2rhr | EMO | Putative ketoacyl reductase | 1.3.1 | 0.442 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.442 | |
| 4c7k | NAP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.442 | |
| 4dfr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 4ktl | 1CQ | Cytochrome P450 | / | 0.442 | |
| 3gwf | FAD | Cyclohexanone monooxygenase | / | 0.441 | |
| 3oag | LPQ | Renin | 3.4.23.15 | 0.441 | |
| 4v12 | POG | MaoC like domain protein | / | 0.441 | |
| 1dds | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 1kkq | 471 | Peroxisome proliferator-activated receptor alpha | / | 0.440 | |
| 2vn0 | TDZ | Cytochrome P450 2C8 | / | 0.440 | |
| 2znn | S44 | Peroxisome proliferator-activated receptor alpha | / | 0.440 | |
| 3csd | EMO | Putative ketoacyl reductase | 1.3.1 | 0.440 | |
| 3dga | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.440 | |
| 3gw9 | VNI | Lanosterol 14-alpha-demethylase | / | 0.440 | |
| 5cpb | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.440 |