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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k7mFAD6-hydroxy-L-nicotine oxidase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3k7mFAD6-hydroxy-L-nicotine oxidase/1.000
3k7tFAD6-hydroxy-L-nicotine oxidase/0.547
3nn6HNK6-hydroxy-L-nicotine oxidase/0.532
2yg4FADPutrescine oxidase/0.495
3zdnFADMonoamine oxidase N1.4.3.40.486
2vvlFADMonoamine oxidase N1.4.3.40.479
2yg5FADPutrescine oxidase/0.475
2yg7FADPutrescine oxidase/0.462
2yg3FADPutrescine oxidase/0.449
4i58FADCyclohexylamine Oxidase/0.440